In most cases, biliary atresia cannot be detected before birth. Routine prenatal ultrasounds usually look healthy. On rare occasions, a small or missing gallbladder may be seen, but this is not enough to confirm a diagnosis.
Diagnosing biliary atresia in a newborn involves a combination of lab tests and imaging studies. It is usually confirmed through a liver biopsy or a special imaging test done during surgery under anesthesia, called intraoperative cholangiography. The process usually begins when a baby's jaundice lasts longer than two weeks. While jaundice is common in newborns, persistent yellowing of the skin and eyes can be a sign that bile is not flowing properly out of the liver. Healthcare professionals use several tools to figure out whether biliary atresia is the cause.
One of the first steps is checking the baby's bilirubin levels through a blood test. Bilirubin is a yellow substance made when the body breaks down old red blood cells. The liver usually turns it into a water-soluble form, called direct or conjugated bilirubin. This bilirubin is released into bile and leaves the body through the intestines.
In babies with biliary atresia, the bile ducts are blocked, so direct bilirubin builds up in the blood. This can lead to symptoms such as jaundice, dark urine and pale stools due to the lack of bile reaching the intestines.
Healthcare professionals are especially concerned when direct bilirubin is over 1.0 milligrams per deciliter (mg/dL) after two weeks of age in babies. Other lab values that may not be within standard range include:
Healthcare professionals also may use a newer blood test called matrix metalloproteinase-7 (MMP7) to help support the diagnosis. MMP7 is a protein that is often much higher in babies with biliary atresia than in those with other liver conditions. While promising, this test is still being studied and is not yet used on its own to make a final diagnosis.
Once blood tests raise concern for biliary atresia, health professionals use imaging to take a closer look at the liver, gallbladder and bile ducts to help confirm the diagnosis.
Ultrasound. If the lab results suggest bile flow blockage, the next step is usually an abdominal ultrasound. This test uses sound waves to create images of the liver and bile ducts. On ultrasound, signs of biliary atresia may include:
A newer ultrasound technique looks for a short bile duct just outside the liver, called the duct at the hilum. If this duct isn't seen, it may point to biliary atresia. The test can be done while the baby is feeding and takes only a few minutes. In one study, this approach accurately identified all infants with biliary atresia and most without the disease. Results from this study suggest that this approach may reduce the need for more-invasive tests such as liver biopsy or intraoperative cholangiogram.
Hepatobiliary iminodiacetic acid (HIDA) scan. This imaging test shows how well bile moves from the liver into the small intestine. A small, safe amount of radioactive tracer is given through an IV, and a special camera tracks how the liver and bile ducts handle it.
If the tracer doesn't reach the intestine, it suggests that bile isn't flowing as it should. But that can happen in several liver conditions, not just biliary atresia. Likewise, some babies with biliary atresia may have a typical HIDA scan. Because of this, the HIDA scan is used together with blood tests, ultrasound and sometimes a liver biopsy to help medical professionals understand the cause of a baby's jaundice.
If imaging and lab results suggest biliary atresia, healthcare professionals may recommend a liver biopsy under anesthesia. This involves taking a very small sample of liver tissue to examine under a microscope. In biliary atresia, the biopsy often shows:
These findings suggest bile duct blockage, most commonly biliary atresia. But they also can be seen in other conditions.
If imaging and biopsy suggest biliary atresia but the diagnosis is still uncertain, healthcare professionals may recommend a minor surgery. During this procedure, surgeons perform an intraoperative cholangiogram. This involves injecting dye directly into the bile ducts and taking X-rays. If the dye does not flow into the intestines, this confirms the diagnosis.
In the same surgery, healthcare professionals may go ahead with treatment by performing Kasai surgery to help drain bile from the liver.
Several other conditions can cause jaundice or pale stools in infants, so it's important for medical professionals to rule them out:
Babies with biliary atresia need early treatment to protect their livers and help bile drain properly. Treatment usually involves surgery. For some babies, treatment is a liver transplant.
The Kasai procedure, also called a hepatoportoenterostomy, is the procedure of choice for biliary atresia. This operation creates a new pathway for bile to leave the liver by connecting the baby's intestine directly to the liver, bypassing the blocked bile ducts.
To perform the Kasai procedure:
The Kasai procedure works best when it is done early, ideally before 60 days of age. Performing the surgery within this window gives the baby the best chance of restoring bile flow and avoiding or delaying a liver transplant.
Even when the surgery is successful, children still need regular follow-ups. Over time, most children develop liver damage and require additional treatment, including the possibility of a liver transplant later in life.

Before surgery, the bile ducts outside the liver are damaged or blocked, preventing bile from draining. After the Kasai procedure, a loop of the small intestine is connected directly to the liver to allow bile to drain into the intestine.
Around 60% to 80% of children with biliary atresia eventually need a liver transplant. A liver transplant may be needed:
Some babies need a transplant soon after diagnosis, while others may live for years before needing one. Transplants can offer a long-term solution when the liver no longer functions well.
Even after surgery, children with biliary atresia need lifelong follow-up with a liver care team. This includes:
With early treatment, good nutrition and medical follow-up, many children with biliary atresia go on to live active, healthy lives.
If your baby has yellowing of the skin or eyes, called jaundice, that lasts longer than two weeks, pale or gray stools, or dark urine, make an appointment with your baby's healthcare professional right away. These may be early signs of a liver or bile duct condition, such as biliary atresia.
If the healthcare professional suspects biliary atresia or another liver condition, you may be referred to a specialist in children's digestive and liver diseases, such as a pediatric gastroenterologist, or to a pediatric liver or transplant center for further testing.
Because appointments can be brief, it helps to be prepared. Here's how you can make the most of your visit.
Don't hesitate to ask any other questions that come up. Understanding your baby's condition can help you feel more confident and supported.
Be ready to answer questions such as:
Learning that your baby has biliary atresia can be overwhelming. You may feel worried, sad or uncertain about what comes next. With time, many parents find ways to cope and feel more confident in caring for their child. These ideas may help: