Overview

Microscopic colitis is a condition where the large intestine, also called the colon, looks healthy but shows changes when viewed under a microscope. These changes cause frequent, watery diarrhea.

It's not clear what causes microscopic colitis. Factors linked to the condition may have some effect in causing, triggering or worsening the condition.

Microscopic colitis is more common among women and older adults.

Treatments include medicines to improve symptoms. Changes in diet and lifestyle habits also may help.

Symptoms

The main symptom of microscopic colitis is frequent watery diarrhea without blood. People with the condition often have multiple stools a day.

The bouts of frequent diarrhea may begin gradually or suddenly. Diarrhea usually continues daily without treatment. New rounds of symptoms can return even after successful treatment.

Other signs and symptoms may include:

  • Diarrhea at night.
  • Accidentally passing stool.
  • Sudden urge to pass stool.
  • Belly pain.
  • Extreme tiredness.
  • Weight loss.

Frequent diarrhea can cause dehydration, which is low levels of fluids and important minerals in the body. Signs and symptoms of dehydration include:

  • Dark-colored urine.
  • Urinating less than usual.
  • Extreme thirst or dry mouth.
  • Tiredness, lightheadedness or fainting.
  • Sunken eyes or cheeks.

When to see a doctor

Many different conditions can cause diarrhea. If you have watery diarrhea that lasts more than a few days, make an appointment with your healthcare professional.

Get the latest health information from Mayo Clinic delivered to your inbox.

Subscribe for free and receive your in-depth guide to digestive health, plus the latest on health innovations and news. You can unsubscribe at any time. Click here for an email preview.

We use the data you provide to deliver you the content you requested. To provide you with the most relevant and helpful information, we may combine your email and website data with other information we have about you. If you are a Mayo Clinic patient, we will only use your protected health information as outlined in our Notice of Privacy Practices. You may opt out of email communications at any time by clicking on the unsubscribe link in the email.

Causes

It's not clear what causes microscopic colitis. Several factors linked to the condition may have some effect in causing, triggering or worsening the condition. They include the following:

  • Autoimmune diseases are irregular immune system conditions in which the immune system attacks healthy tissues. Autoimmune diseases that may be linked to microscopic colitis include celiac disease, rheumatoid arthritis, type 1 diabetes and Crohn's disease.
  • Medicines that may be related to microscopic colitis include:
    • Certain pain relievers, such as aspirin, ibuprofen (Advil, Motrin IB, others) and naproxen sodium (Aleve).
    • Treatments for excess stomach acid called proton pump inhibitors (PPIs), including lansoprazole (Prevacid), esomeprazole (Nexium), omeprazole (Prilosec) and others.
    • Treatments for depression called selective serotonin reuptake inhibitors (SSRIs), including escitalopram (Lexapro), fluoxetine (Prozac), sertraline (Zoloft) and others.
    • Treatments for high cholesterol called statins, including atorvastatin (Lipitor), lovastatin (Altoprev), simvastatin (Zocor) and others.
  • Infections in the digestive tract may be a contributing factor in some people.
  • Bile acids, which play a role in the digestion of certain fats, sometimes aren't absorbed and recycled correctly, possibly contributing to changes in the colon.

Microscopic colitis is an inflammatory condition. Inflammation is typically the immune system's reaction to disease or injury and is part of the healing process. But some conditions cause long-term inflammation that can damage tissues and affect how they work.

Risk factors

Factors than increase the risk of microscopic colitis include:

  • Older age.
  • Female sex.
  • Family history of microscopic colitis.
  • Alcohol use.
  • Smoking.

Complications

Frequent diarrhea has an impact on the overall quality of life. It can affect the ability to work and be involved in recreational and social activities.

Microscopic colitis does not increase the risk of colon cancer, unlike some other inflammatory diseases of the colon.

Sept. 09, 2026
  1. Peery AF, er al. Update on the epidemiology and management of microscopic colitis. Clinical Gastroenterology and Hepatology. 2025; doi:10.1016/j.cgh.2024.08.026.
  2. Dietrich CF. Microscopic (lymphocytic and collagenous) colitis: Clinical manifestations, diagnosis, and management. https://www.uptodate.com/contents/search. Accessed Dec. 8, 2025.
  3. Microscopic colitis. National Institute of Diabetes and Digestive and Kidney Diseases. https://www.niddk.nih.gov/health-information/digestive-diseases/microscopic-colitis/all-content. Accessed Dec. 8, 2025.
  4. Ferri FF. Microscopic colitis (lymphocytic colitis). In: Ferri's Clinical Advisor 2026. Elsevier; 2026. https://www.clinicalkey.com. Accessed Dec. 8, 2025.
  5. Symptoms and causes of diarrhea. National Institute of Diabetes and Digestive and Kidney Diseases. https://www.niddk.nih.gov/health-information/digestive-diseases/diarrhea/symptoms-causes. Accessed Dec. 8, 2025.
  6. Diarrhea nutrition therapy. Nutrition Care Manual. Academy of Nutrition and Dietetics. https://www.nutritioncaremanual.org. Accessed Dec. 8, 2025.
  7. Bowel control problems (Fecal incontinence). National Institute of Diabetes and Digestive and Kidney Diseases. https://www.niddk.nih.gov/health-information/digestive-diseases/bowel-control-problems-fecal-incontinence. Accessed Dec. 9, 2025.

Related

Products & Services